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r edger de
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6
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What is difference between classic and GLM edgeR
r edger de
9.3 years ago
adrianna-christina
▴ 10
2
votes
2
replies
4.1k
views
EdgeR with normalized data
r edger de
updated 9.2 years ago by
Steve Lianoglou
★ 13k • written 9.2 years ago by
aiko
• 0
1
vote
8
replies
3.1k
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how to design contrast formula with 2 factors multiple levels in edgeR?
R edgeR DE
9.5 years ago
feicaiyi
• 0
5
votes
3
replies
3.1k
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Understanding edgeR coefficients and design
edger
r edger de
rna-seq
updated 8.8 years ago by
Gordon Smyth
50k • written 8.9 years ago by
gthm
▴ 30
2
votes
5
replies
1.8k
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ANOVA in EdgeR
edger main and interaction effects
edger
r edger de
8.5 years ago
julie.green
• 0
2
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6
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1.4k
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edgeR - making 12 contrast but only get 5 contrasts as a result
r edger de
contrast
design and contrast matrix
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
nooshin
▴ 300
2
votes
4
replies
982
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nested modeling for unequal groups with edgeR
edger
r edger de
updated 7.9 years ago by
Ryan C. Thompson
★ 7.9k • written 7.9 years ago by
Emmanouela Repapi
▴ 20
7 results • Page
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Comment: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm
by
Michael Love
42k
You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Got you. Thanks again for your comments.
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…
Answer: ERROR; return code from pthread_create() is 22
by
James W. MacDonald
65k
Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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